Believe it or not, its easy to change your oil on a motorcycle. At least on my 1999 Yamaha R6, its easy! Hopefully this post will help out those who may think this maybe a daunting task. Daunting only because a single mistake can cost you significant injuries or even worse, your life. And with that, I would like to add that I am not liable for any injuries that may have been the result of this post. I merely describe my experiences. Please use caution and continue at your own risk. Hopefully you still want to read on and learn something new.
This guide should be applicable not only to 1999 R6 but any R6 from 1999-2002. Also, the steps taken here should also help guide oil changes for other sport bikes.
To begin, make sure you have the right tools for the job.

Step 1a: Gather all your tools and materials
Shown in the picture are 3 quarts of motor oil, 1 oil filter, 1 oil filter tool, 1 torque wrench, and 1 ratchet wrench set. Not shown but is required is a flat-head screwdriver, dirty rag, and a rear motorcycle stand.

Step 1b: Gather the oil pan so you can collect and recycle
An oil container to collect your oil and recycle will help as well. You’re probably wondering, “I don’t have a rear motorcycle stand or a torque wrench.” Well, the motorcycle stand is very helpful if you’re working on your motorcycle. Its also perfect if you park your motorcycle for a long period of time. This way the oil is distributed evenly in the center of the engine so that its not constantly leaning to the left side. A torque wrench is probably not as essential. If you do want one, I suggest go out and splurge on a really nice one that gives you 0-150 ft. lbs. of torque reading. Don’t go for what I have in the picture. Its very difficult to read and I’ve already returned it.
You should also consider the brand of oil. Although, my owner’s manual for my R6 recommends a 10W30 SAE oil for cold weather and 15W40 for warmer weather, I went with the Castrol R4. At $10 a qt, it isn’t the cheapest stuff out there. But its supposedly the best thing you can put in your bike which burns really clean and its synthetic. The only difference I’ve noticed is that when my bike is idling now, the wound is alot deeper and sounds better when I accelerate. I believe there may be some improvements on horsepower, but really no way in validating this without bring it in for a test. Its probably more psychological than anything else.
The oil filter I chose was from Fram. Filter number PH6017A should fit the standard R6 from 1999-2002.
After you’ve straightened out the items you need to buy, warm up your motorcycle. Take it out for a quick ride and come back so you can help the oil drain out easier when the vehicle is warm.

2a: Remove right lower plastic fairing

2b: Remove left lower plastic fairing
Remove the screws indicated by the arrows in the photos and remove the left and right lower fairing.

2c: Motorcycle without fairing
The left side of your motorcycle should look like this without the fairing.

2d: Keep both left and right fairings intact
The fairing should come off in one piece like the image above.

3: Remove oil cap and check oil dip stick
Remove the oil cap and check the oil level with the oil dip stick.

4a: Identify oil filter and drain plug

4b: Another picture of oil filter and drain plug
Locate the oil filter and drain plug and remove the drain plug first.

5a: Remove drain plug and then oil filter in that order
Oil should drain out like the image above as soon as you remove the drain plug. Wait till there’s a trickle left until you proceed to remove the oil filter. The oil filter will have residual oil so make sure you catch the dripping oil with your pan/container.

5b: Removed drain plug and oil cap so oil flows faster out
Set your oil cap and drain plug aside while you’re draining your oil. Once all oil is drained, clean the drain plug with your rag.

6a: Apply light oil around the rim of the oil filter

6b: Apply oil around drain plug (yellow). Don’t lose washer (red).
Apply a light coat of oil around the rim of the oil filter and drain plug. Make sure you do not lose the washer of the drain plug! Clean the hole or surface where you’re going to screw the oil filter and drain plug so that there’s no dirt that may get trapped. The filter should be screwed on with 12 ft. lbs. of torque and the drain plug should be 36 ft. lbs. of torque.

7: After tightening drain plug and oil filter pour oil in the engine
After you’ve tighten both oil filter and drain plug, proceed to pour your 3.5 quarts of oil in the engine. Check the dipstick constantly to make sure you have enough oil. Warm your bike up again and make sure oil is not leaking from the drain plug or the oil filter. Once satisfied, proceed to attach the fairing back to the same position and screw the piece back on. This may take some time and is primarily the reason why shops charge an hourly rate because it takes them time to remove and put back these fairing pieces back together. And there you have it! Your first oil change.
On a side note, I bought 2 cleaner solutions called Moto Pro to clean my bike. That stuff is incredible!

Moto Pro Motorcycle Cleaner

Moto Pro Contact Cleaner
The first cleaner does a really good job removing the dirt from your bike. The contact cleaner is incredible on tough dirt. Check out the before and and after photos of my rear wheel.

Rear Tire Before Moto Pro

Rear Tire After Moto Pro
Needless to say I’m happy with the $7 I spent on the cleaner spray and $4 on the contact cleaner.
I also recommend that you lube your chain while you’re at it. I use Bel-Ray’s Super Clean Chain Lube. This stuff sprays on white and keeps your chain from getting dirty. After it sets for 15 minutes, it doesn’t splatter any oil while the chain is spinning through the sprocket during operation. That’s the main reason my rear rims was so dirty was because my previous oil change guy used motor oil to lube my chain.
This should get you started in your new weekend job as a motorcycle mechanic! If not, its another thing you can put under your skills section of your resume. Actually not really. Its just good to know for your own curiosity. Let me know if you find this useful.